SRP131661

ENA first seen 2022

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

99,868 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 11654522388260 reported

total reads 60343260177 reported

n content pct 0.001 measured

pct q20 bases 96 measured

pct q30 bases 93.9 measured

gc content pct 46.9 measured

mean read length 100 measured

mean base quality 35.7 measured

adapter content pct 1.58 measured

duplication rate pct 80.19 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

mean base quality 35.7 measured ×0.6 100%

adapter content pct 1.58 measured ×0.4 100%

duplication rate pct 80.19 measured ×0.4 0%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0