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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
60/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
freshwater metagenome
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
118 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
40785904056
reported
total reads
151958270
reported
n content pct
0.001
measured
pct q20 bases
94.9
measured
pct q30 bases
87.9
measured
gc content pct
50.9
measured
mean read length
151
measured
mean base quality
33.5
measured
adapter content pct
94
measured
duplication rate pct
82.33
measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 60/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
87.9
measured
×1
90%
adapter content pct
94
measured
×0.5
0%
QC cost
18 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0