SRP142330

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

16S amplicon sequencing from Saccharomyces cerevisiae on MiSeq with >501 million reads and good quality (97% Q20, 95.5% Q30), representing massive over-sequencing of yeast controls.

Data type / assay

amplicon

Organism

Saccharomyces cerevisiae

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

130 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 77107711408 reported

total reads 501299923 reported

n content pct 0.001 measured

pct q20 bases 97 measured

pct q30 bases 95.5 measured

gc content pct 40.8 measured

mean read length 75 measured

mean base quality 34.7 measured

adapter content pct 7.28 measured

duplication rate pct 21.38 measured

mean target coverage 321282.1 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

adapter content pct 7.28 measured ×0.5 55%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0