Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRP145556

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This is sediment metagenome amplicon sequencing. The D grade is driven by an extremely high duplication rate of 92.6%—with 30,715 total reads, that means only ~2,400 truly unique sequences, which severely limits your ability to resolve taxa accurately. This duplication likely reflects PCR over-amplification or insufficient complexity in your sample, and could introduce compositional bias into any community profiling analysis you run.

Data type / assay
amplicon
Organism
sediment metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 17408546 reported
total reads 30715 reported
n content pct 0.004 measured
pct q20 bases 90.5 measured
pct q30 bases 78.4 measured
gc content pct 58 measured
mean read length 300.5 measured
mean base quality 33 measured
adapter content pct 0 measured
duplication rate pct 92.57 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 78.4 measured ×1 42%
adapter content pct 0 measured ×0.5 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0