Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRP147939

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing from Abaratha angulata on HiSeq X Ten with >4 billion reads but notably lower quality (73.3% Q20, 67.1% Q30), suitable for assembly and variant discovery with acknowledgment that quality filtering will be necessary for downstream analysis.

Data type / assay
WGS
Organism
Abaratha angulata
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
248 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1031043985955 reported
total reads 4238986721 reported
n content pct 0 measured
pct q20 bases 73.3 measured
pct q30 bases 67.1 measured
gc content pct 33.8 measured
mean read length 46.5 measured
mean base quality 31.3 measured
adapter content pct 0 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 67.1 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0