SRP148434

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

16S amplicon sequencing of soil metagenome on PacBio Sequel with ~647k long reads and excellent quality (98.9% Q20, 97.7% Q30), providing full-length 16S rRNA sequences for robust taxonomic resolution beyond typical short-read amplicon limitations.

Data type / assay

amplicon

Organism

soil metagenome

Instrument

Sequel

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

18 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 484760292 reported

total reads 647244 reported

n content pct 0 measured

pct q20 bases 98.9 measured

pct q30 bases 97.7 measured

gc content pct 55.7 measured

mean read length 450.3 measured

mean base quality 87 measured

adapter content pct 0 measured

duplication rate pct 51.66 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.7 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0