SRP155357

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

16S amplicon sequencing from Homo sapiens on MiSeq with ~9.75 million reads and good quality (93.1% Q20, 89.6% Q30), enabling robust human microbiota profiling with adequate taxonomic resolution.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2998892379 reported

total reads 9754470 reported

n content pct 0 measured

pct q20 bases 93.1 measured

pct q30 bases 89.6 measured

gc content pct 51.4 measured

mean read length 306.9 measured

mean base quality 35.2 measured

adapter content pct 0 measured

duplication rate pct 85.27 measured

mean target coverage 48.4 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.6 measured ×1 98%

adapter content pct 0 measured ×0.5 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0