SRP158345

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

16S amplicon sequencing from Oryza sativa Japonica Group on HiSeq 2500 with ~4.7 million reads and good quality (95.6% Q20, 93.1% Q30), enabling rice rhizosphere or phyllosphere microbiota profiling.

Data type / assay

amplicon

Organism

Oryza sativa Japonica Group

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

56 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1785524950 reported

total reads 4767568 reported

n content pct 0.006 measured

pct q20 bases 95.6 measured

pct q30 bases 93.1 measured

gc content pct 41.7 measured

mean read length 244 measured

mean base quality 37.2 measured

adapter content pct 0 measured

duplication rate pct 98.37 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.1 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0