SRP158580

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Rhodnius prolixus bulk-RNA-seq with excellent metrics across all dimensions—Q30 97.5%, low duplication (19.24%), and minimal adapter contamination (0.57%)—suitable for confident transcript abundance and novel isoform discovery.

Data type / assay

bulk-RNA-seq

Organism

Rhodnius prolixus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 12969570388 reported

total reads 64205794 reported

n content pct 0.003 measured

pct q20 bases 98.9 measured

pct q30 bases 97.5 measured

gc content pct 38 measured

mean read length 101 measured

mean base quality 37.5 measured

adapter content pct 0.57 measured

duplication rate pct 19.24 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.5 measured ×1 100%

mean base quality 37.5 measured ×0.6 100%

adapter content pct 0.57 measured ×0.4 100%

duplication rate pct 19.24 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0