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Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ATAC-seq
Organism
Homo sapiens
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
54 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
212491179450
reported
total reads
4249823589
reported
n content pct
0.324
measured
pct q20 bases
84.4
measured
pct q30 bases
68.8
measured
gc content pct
49
measured
mean read length
50
measured
mean base quality
30.3
measured
adapter content pct
0.13
measured
duplication rate pct
26.53
measured
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
68.8
measured
×1
0%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0