SRP164294

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

16S amplicon sequencing from Homo sapiens on HiSeq X Ten with >1.2 billion reads and good quality (95.8% Q20, 91.3% Q30), providing exceptional depth for human microbiota profiling with robust statistical power.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

18 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 385288005016 reported

total reads 1279237272 reported

n content pct 0.008 measured

pct q20 bases 95.8 measured

pct q30 bases 91.3 measured

gc content pct 43.5 measured

mean read length 151 measured

mean base quality 38.1 measured

adapter content pct 0.85 measured

duplication rate pct 60.96 measured

mean target coverage 6214.3 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.3 measured ×1 100%

adapter content pct 0.85 measured ×0.5 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0