Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRP183064

SRA

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Specialized miRNA sequencing of human samples via Illumina HiSeq 2500 targeting mature microRNAs with 51 bp reads and exceptional quality (99.6% Q20), enabling quantitative profiling of regulatory RNAs. Focused capture supports discovery of disease-associated miRNAs, though narrow fragment size constrains detection of other small RNA classes.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
12 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 8266965870 reported
total reads 162097370 reported
n content pct 0.003 measured
pct q20 bases 99.6 measured
pct q30 bases 99.1 measured
gc content pct 51.6 measured
mean read length 51 measured
mean base quality 40 measured
adapter content pct 0 measured
duplication rate pct 91.11 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.1 measured ×1 100%
mean base quality 40 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 91.11 measured ×0.4 0%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0