SRP282270

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

380 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1622437781600 reported

total reads 5782469769 reported

n content pct 0.135 measured

pct q20 bases 97.1 measured

pct q30 bases 91.6 measured

gc content pct 55 measured

mean read length 141.9 measured

mean base quality 38.1 measured

adapter content pct 0 measured

duplication rate pct 63.36 measured

mean target coverage 26168.4 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 26168.4 extrapolated ×1.2 100%

pct q30 bases 91.6 measured ×1 100%

duplication rate pct 63.36 measured ×0.5 0%

adapter content pct 0 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0