SRR029692

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

human gut metagenome

Instrument

454 GS FLX

Platform

LS454

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 10.64 measured

checksum ok yes reported

total bases 95202317 reported

total reads 443526 reported

n content pct 0 measured

pct q20 bases 92.4 measured

pct q30 bases 24.7 measured

pct reads q30 0.2 measured

sampled bases 58225966 measured

sampled reads 342539 measured

gc content pct 47.5 measured

polyg tail pct 0 measured

read length sd 72 measured

quality dropoff -0.2 measured

read length max 385 measured

read length min 35 measured

read length n50 220 measured

max base quality 55 measured

mean read length 170 measured

max n pct per pos 0 measured

mean base quality 28 measured

pct reads lt 100bp 22.66 measured

read length median 169 measured

adapter content pct 0 measured

median read quality 28.1 measured

duplication rate pct 3.21 measured

overrepresented top pct 0 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 24.7 measured ×1 0%

duplication rate pct 3.21 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0