Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR032215

ENA first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

50/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human whole-genome sequencing. Critically underpowered: mean coverage extrapolated at 0.7× (0/100 score, weight 1.2)—insufficient for reliable variant detection at >99% confidence. Evidence strength 0.61; deep measured pass pending. Reuse only for extremely rare-variant screening or non-SNP features.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2150145640 reported
total reads 14145695 reported
mean coverage 0.7 extrapolated
n content pct 1.736 measured
pct q20 bases 88.7 measured
pct q30 bases 83 measured
gc content pct 39.8 measured
mean read length 76 measured
mean base quality 33.1 measured
adapter content pct 0.37 measured
duplication rate pct 1.46 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 50/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.7 extrapolated ×1.2 0%
pct q30 bases 83 measured ×1 65%
duplication rate pct 1.46 measured ×0.5 100%
adapter content pct 0.37 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0