Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR032372

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

58/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Short-read WGS of E. coli B REL606 from an Illumina Genome Analyzer, capturing ~286 Mb with 74% of bases at Q30. The data is well-suited for comparative genomics or resolving SNPs and indels in this laboratory strain, though the modest coverage and older platform should be considered when planning de novo assembly or detecting rare variants.

Data type / assay
WGS
Organism
Escherichia coli B str. REL606
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 285614316 reported
total reads 7933731 reported
n content pct 0.052 measured
pct q20 bases 93.5 measured
pct q30 bases 74.2 measured
gc content pct 50.6 measured
mean read length 36 measured
mean base quality 31.7 measured
adapter content pct 0 measured
duplication rate pct 6.3 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 58/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.2 measured ×1 21%
duplication rate pct 6.3 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0