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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
53/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Candida albicans SC5314
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
10.29
measured
checksum ok
yes
reported
total bases
127429428
reported
total reads
4551051
reported
n content pct
0.159
measured
pct q20 bases
91
measured
sampled bases
28000000
measured
sampled reads
1000000
measured
gc content pct
33.9
measured
polyg tail pct
0
measured
read length sd
0
measured
quality dropoff
-3.7
measured
read length max
28
measured
read length min
28
measured
read length n50
28
measured
max base quality
27
measured
mean read length
28
measured
max n pct per pos
10.41
measured
mean base quality
25.2
measured
pct reads lt 100bp
100
measured
read length median
28
measured
adapter content pct
0.09
measured
median read quality
25.8
measured
duplication rate pct
36.43
measured
overrepresented top pct
0.11
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 53/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
mean base quality
25.2
measured
×0.6
0%
adapter content pct
0.09
measured
×0.4
100%
duplication rate pct
36.43
measured
×0.4
86%
QC cost
35 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0