SRR089408

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Amplicon sequencing of S. pombe. Grade A (98/100) with Q30 at 89.9% and minimal adapter content at 1.61% (scored 96/100). High duplication (72.57%) is expected and acceptable for amplicon assays; reliable for targeted-sequencing studies.

Data type / assay

amplicon

Organism

Schizosaccharomyces pombe

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1314323598 reported

total reads 31293419 reported

n content pct 0.001 measured

pct q20 bases 96 measured

pct q30 bases 89.9 measured

gc content pct 48.2 measured

mean read length 42 measured

mean base quality 35.8 measured

adapter content pct 1.61 measured

duplication rate pct 72.57 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.9 measured ×1 100%

adapter content pct 1.61 measured ×0.5 96%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0