SRR094875

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5450281616 reported

total reads 18665348 reported

mean coverage 38.9 extrapolated

n content pct 0.01 measured

pct q20 bases 94.8 measured

pct q30 bases 88.3 measured

gc content pct 43.2 measured

mean read length 146 measured

mean base quality 35.2 measured

adapter content pct 2.6 measured

duplication rate pct 0.99 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 38.9 extrapolated ×1.2 100%

pct q30 bases 88.3 measured ×1 92%

duplication rate pct 0.99 measured ×0.5 100%

adapter content pct 2.6 measured ×0.4 89%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0