SRR1002988

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq from invasive fruit fly (Drosophila suzukii) on HiSeq 2000. Grade A; excellent quality with Q30 89.5%, mean base quality 34.9, low duplication (24.17%), and minimal adapter content (0.45%). High read depth (37.8M reads, 100 bp each) and consistent metrics across all dimensions. Highly suitable for expression profiling and genome annotation.

Data type / assay

bulk-RNA-seq

Organism

Drosophila suzukii

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7558796400 reported

total reads 37793982 reported

n content pct 0.002 measured

pct q20 bases 95.3 measured

pct q30 bases 89.5 measured

gc content pct 51 measured

mean read length 100 measured

mean base quality 34.9 measured

adapter content pct 0.45 measured

duplication rate pct 24.17 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.5 measured ×1 98%

mean base quality 34.9 measured ×0.6 100%

adapter content pct 0.45 measured ×0.4 100%

duplication rate pct 24.17 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0