SRR10034574

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

miRNA-seq from the honeybee Apis cerana using an Illumina HiSeq 2500, generating 11.8 million reads with excellent quality (Q30 91.6%). This focused microRNA profile enables detection of differentially-expressed miRNAs across developmental stages or between social castes.

Data type / assay

bulk-RNA-seq

Organism

Apis cerana

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 587861150 reported

total reads 11757223 reported

n content pct 0.005 measured

pct q20 bases 96.4 measured

pct q30 bases 91.6 measured

gc content pct 52.7 measured

mean read length 50 measured

mean base quality 35.1 measured

adapter content pct 28.68 measured

duplication rate pct 70.06 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.6 measured ×1 100%

mean base quality 35.1 measured ×0.6 100%

adapter content pct 28.68 measured ×0.4 0%

duplication rate pct 70.06 measured ×0.4 11%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0