SRR10034604

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Short-read bulk RNA-seq from whitefly (Bemisia tabaci). Grade A; excellent quality with Q30 92.4% and mean base quality 35.4 on BGISEQ-500. Only minor concern is 31.67% duplication, likely biological background. High read depth and consistent metrics support robust expression profiling; recommended for reuse.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1066428650 reported

total reads 21328573 reported

n content pct 0.085 measured

pct q20 bases 98.6 measured

pct q30 bases 92.4 measured

gc content pct 38.2 measured

mean read length 50 measured

mean base quality 35.4 measured

adapter content pct 0 measured

duplication rate pct 31.67 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%

mean base quality 35.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 31.67 measured ×0.4 96%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0