SRR10051039

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Escherichia coli

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 206451803 reported

total reads 434618 reported

mean coverage 44.9 extrapolated

n content pct 0.009 measured

pct q20 bases 88 measured

pct q30 bases 74.1 measured

gc content pct 50.8 measured

mean read length 237.3 measured

mean base quality 31.8 measured

adapter content pct 0 measured

duplication rate pct 7.27 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 44.9 extrapolated ×1.2 100%

pct q30 bases 74.1 measured ×1 21%

duplication rate pct 7.27 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0