SRR10051169

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes albopictus bulk RNA-seq from HiSeq 2500 with exceptional metrics (Grade A, 100/100). Despite short 50bp reads, base quality is outstanding (Q30=97.7%, mean=38.5), duplication minimal (19.09%), and adapter contamination negligible (0.06%). Excellent candidate for reuse.

Data type / assay

bulk-RNA-seq

Organism

Aedes albopictus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1533995150 reported

total reads 30679903 reported

n content pct 0.004 measured

pct q20 bases 98.8 measured

pct q30 bases 97.7 measured

gc content pct 48.9 measured

mean read length 50 measured

mean base quality 38.5 measured

adapter content pct 0.06 measured

duplication rate pct 19.09 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.7 measured ×1 100%

mean base quality 38.5 measured ×0.6 100%

adapter content pct 0.06 measured ×0.4 100%

duplication rate pct 19.09 measured ×0.4 100%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0