SRR10058449

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Near-reference-quality bulk short-read RNA-seq with excellent basecall accuracy (Q30=94.4%, mean Q=36) and very deep sequencing (9.1 Gb, 30M reads). Duplication at 34.56% (scored 90/100, weight 0.4) is a minor limitation; long reads (151 bp) support high-confidence mapping. Ideal for isoform-level expression and transcript discovery.

Data type / assay

bulk-RNA-seq

Organism

Zeugodacus cucurbitae

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9107083914 reported

total reads 30155907 reported

n content pct 0.002 measured

pct q20 bases 98 measured

pct q30 bases 94.4 measured

gc content pct 44.9 measured

mean read length 151 measured

mean base quality 36 measured

adapter content pct 1.48 measured

duplication rate pct 34.56 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.4 measured ×1 100%

mean base quality 36 measured ×0.6 100%

adapter content pct 1.48 measured ×0.4 100%

duplication rate pct 34.56 measured ×0.4 90%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0