SRR10112108

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

High-quality BGISEQ bulk RNA-seq with excellent read depth (100bp, 69M reads) and strong base composition (92.4% Q30), moderated by moderate duplication at 45.53%; duplication profile suggests potential PCR bias in library amplification. Suitable for gene-level expression profiling but consider duplication filtering for sensitive transcript-level studies.

Data type / assay

bulk-RNA-seq

Organism

Aldrichina grahami

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6912813600 reported

total reads 69128136 reported

n content pct 0 measured

pct q20 bases 98.4 measured

pct q30 bases 92.4 measured

gc content pct 40.5 measured

mean read length 100 measured

mean base quality 35.4 measured

adapter content pct 0 measured

duplication rate pct 45.53 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%

mean base quality 35.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 45.53 measured ×0.4 66%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0