SRR1014316

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Good-quality whole-genome sequencing with low duplication (7.66%) and minimal adapter contamination (0.04%), moderated by Q30 coverage at 85.6%; dataset is suitable for de novo assembly and variant calling in this bacterial strain but will benefit from careful variant filtering to control for error-induced false positives in low-diversity regions.

Data type / assay

WGS

Organism

Pseudomonas aeruginosa BWHPSA016

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 398702954 reported

total reads 1973777 reported

n content pct 0.023 measured

pct q20 bases 92.8 measured

pct q30 bases 85.6 measured

gc content pct 65 measured

mean read length 101 measured

mean base quality 33.1 measured

adapter content pct 0.04 measured

duplication rate pct 7.66 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.6 measured ×1 78%

duplication rate pct 7.66 measured ×0.5 100%

adapter content pct 0.04 measured ×0.4 100%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0