SRR10143169

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Bombyx mori using Illumina HiSeq 2000 generating ~28 million short reads with exceptional quality (98.2% Q20 bases) suitable for comprehensive transcriptome profiling and gene expression analysis in this economically important silk-producing insect.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8439049500 reported

total reads 28130165 reported

n content pct 0 measured

pct q20 bases 98.2 measured

pct q30 bases 95 measured

gc content pct 44.2 measured

mean read length 150 measured

mean base quality 36.2 measured

adapter content pct 0.01 measured

duplication rate pct 36.03 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%

mean base quality 36.2 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 36.03 measured ×0.4 87%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0