SRR10168704

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

45/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Citrus maxima whole-genome sequencing from NovaSeq 6000 with ~4.9M short reads and moderate quality (Q30: 79%), limiting confidence in variant calls; better suited for draft assembly or reference-guided analysis. The 40% GC is expected for plant genomes.

Data type / assay

WGS

Organism

Citrus maxima

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1477539600 reported

total reads 4925132 reported

n content pct 0 measured

pct q20 bases 97.2 measured

pct q30 bases 79 measured

gc content pct 40 measured

mean read length 150 measured

mean base quality 35.6 measured

adapter content pct 0.04 measured

duplication rate pct 40.93 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 45/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79 measured ×1 45%

duplication rate pct 40.93 measured ×0.5 0%

adapter content pct 0.04 measured ×0.4 100%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0