SRR10168705

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Citrus maxima whole-genome sequencing from NovaSeq 6000 with ~5M reads at high quality (Q30: 94.3%, Q20: 98.1%), providing moderate depth for variant discovery in citrus germplasm. The 39% GC is consistent with plant genomes.

Data type / assay

WGS

Organism

Citrus maxima

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1499862300 reported

total reads 4999541 reported

n content pct 0.001 measured

pct q20 bases 98.1 measured

pct q30 bases 94.3 measured

gc content pct 39 measured

mean read length 150 measured

mean base quality 37.8 measured

adapter content pct 0.04 measured

duplication rate pct 58.68 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.3 measured ×1 100%

duplication rate pct 58.68 measured ×0.5 0%

adapter content pct 0.04 measured ×0.4 100%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0