SRR10197230

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq from Drosophila sechellia on HiSeq 4000 with ~19 million reads and exceptional quality (99.4% Q20, 98.3% Q30), ideal for studying gene expression in this specialized host-restricted Drosophila species endemic to the Seychelles.

Data type / assay

bulk-RNA-seq

Organism

Drosophila sechellia

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1249433900 reported

total reads 19222060 reported

n content pct 0.012 measured

pct q20 bases 99.4 measured

pct q30 bases 98.3 measured

gc content pct 44.1 measured

mean read length 65 measured

mean base quality 39.9 measured

adapter content pct 0.02 measured

duplication rate pct 71.11 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.3 measured ×1 100%

mean base quality 39.9 measured ×0.6 100%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 71.11 measured ×0.4 9%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0