SRR10231782

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

49/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina short-read ncRNA-seq; grade F, unsuitable for reuse. Catastrophic adapter contamination (95%) and extreme duplication (80.46%) render sequence identity and abundance estimates uninterpretable for any ncRNA analysis.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 666947700 reported

total reads 8892636 reported

n content pct 0.002 measured

pct q20 bases 89.8 measured

pct q30 bases 84.6 measured

gc content pct 53.5 measured

mean read length 75 measured

mean base quality 32.5 measured

adapter content pct 95 measured

duplication rate pct 80.46 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 49/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.6 measured ×1 73%

mean base quality 32.5 measured ×0.6 75%

adapter content pct 95 measured ×0.4 0%

duplication rate pct 80.46 measured ×0.4 0%

QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0