Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR10231783

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

55/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Severely compromised ncRNA-seq dataset with near-total adapter contamination (95.07%) and extreme duplication (72.42%) dominating quality failure; the dataset is unsuitable for reliable ncRNA quantification without aggressive preprocessing, and the high duplication-to-adapter ratio suggests systematic library construction failure rather than recoverable trimming issues. Resequencing strongly recommended.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 606350475 reported
total reads 8084673 reported
n content pct 0.002 measured
pct q20 bases 91.1 measured
pct q30 bases 86.3 measured
gc content pct 51.9 measured
mean read length 75 measured
mean base quality 32.8 measured
adapter content pct 95.07 measured
duplication rate pct 72.42 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 55/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.3 measured ×1 82%
mean base quality 32.8 measured ×0.6 80%
adapter content pct 95.07 measured ×0.4 0%
duplication rate pct 72.42 measured ×0.4 6%
QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0