SRR10248714

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina short-read miRNA-seq; grade D, not recommended for reuse. Despite good base quality (Q30=95.5%), catastrophic adapter contamination (93.57%) and extreme duplication (78.92%) distort miRNA abundance estimates beyond recovery by standard trimming.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1293581475 reported

total reads 17247753 reported

n content pct 0.001 measured

pct q20 bases 97.2 measured

pct q30 bases 95.5 measured

gc content pct 51.6 measured

mean read length 75 measured

mean base quality 34.7 measured

adapter content pct 93.57 measured

duplication rate pct 78.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

mean base quality 34.7 measured ×0.6 100%

adapter content pct 93.57 measured ×0.4 0%

duplication rate pct 78.92 measured ×0.4 0%

QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0