SRR10253165

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing of Drosophila simulans using HiSeq 2000 producing ~49.9M short reads with excellent quality (Q30: 96.8%), enabling high-confidence variant discovery and evolutionary genomics. The 50% GC is canonical for Drosophila.

Data type / assay

WGS

Organism

Drosophila simulans

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9981652800 reported

total reads 49908264 reported

n content pct 0.003 measured

pct q20 bases 98.9 measured

pct q30 bases 96.8 measured

gc content pct 50 measured

mean read length 100 measured

mean base quality 39.6 measured

adapter content pct 1.03 measured

duplication rate pct 41.14 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.8 measured ×1 100%

duplication rate pct 41.14 measured ×0.5 0%

adapter content pct 1.03 measured ×0.4 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0