SRR1027053

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Helicoverpa armigera bulk RNA-seq from Illumina Genome Analyzer II producing ~25.8M reads with high quality (Q30: 91.4%, Q20: 98.4%), supporting pest transcriptomics and development studies. The 44.3% GC is characteristic of lepidopteran genomes.

Data type / assay

bulk-RNA-seq

Organism

Helicoverpa armigera

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4419370565 reported

total reads 25848663 reported

n content pct 0.001 measured

pct q20 bases 98.4 measured

pct q30 bases 91.4 measured

gc content pct 44.3 measured

mean read length 96.2 measured

mean base quality 36.4 measured

adapter content pct 0 measured

duplication rate pct 38.63 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.4 measured ×1 100%

mean base quality 36.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 38.63 measured ×0.4 81%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0