SRR10291830

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

22/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing from Zealanapis sp. SK3 (New Zealand bee) on HiSeq 2500 with ~1 million reads and modest quality (77% Q20, 63.3% Q30), representing limited coverage appropriate for draft assembly or species identification rather than detailed variant analysis.

Data type / assay

WGS

Organism

Zealanapis sp. SK3

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 260184052 reported

total reads 1063788 reported

n content pct 0.009 measured

pct q20 bases 77 measured

pct q30 bases 63.3 measured

gc content pct 42.3 measured

mean read length 114.6 measured

mean base quality 30.1 measured

adapter content pct 0 measured

duplication rate pct 38.32 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 22/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 63.3 measured ×1 0%

duplication rate pct 38.32 measured ×0.5 5%

adapter content pct 0 measured ×0.4 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0