SRR10291840

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

30/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Semysmauchenius sp. WGS with severe base quality defect (Grade F, 30/100). Q30 at 53.1% is critically low and the primary failing metric, failing to meet WGS standards for assembly and variant detection. Not recommended for reuse.

Data type / assay

WGS

Organism

Semysmauchenius sp. CAS ENT 9070036

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 291899531 reported

total reads 1185149 reported

n content pct 0.015 measured

pct q20 bases 64.8 measured

pct q30 bases 53.1 measured

gc content pct 48.7 measured

mean read length 120.2 measured

mean base quality 27.8 measured

adapter content pct 0 measured

duplication rate pct 28.74 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 30/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 53.1 measured ×1 0%

duplication rate pct 28.74 measured ×0.5 35%

adapter content pct 0 measured ×0.4 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0