SRR1037160

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

LS454 long-read bulk RNA-seq; grade C, marginal for reuse. Below-standard Q30 (79.4%) limits base accuracy; longer read length (mean=428.9 bp) provides partial compensation but insufficient for accurate variant calling or isoform resolution.

Data type / assay

bulk-RNA-seq

Organism

Prunus persica

Instrument

454 GS FLX Titanium

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 831852758 reported

total reads 1556684 reported

n content pct 0.015 measured

pct q20 bases 93.2 measured

pct q30 bases 79.4 measured

gc content pct 48.1 measured

mean read length 428.9 measured

mean base quality 34.7 measured

adapter content pct 0 measured

duplication rate pct 44.63 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 79.4 measured ×1 47%

mean base quality 34.7 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 44.63 measured ×0.4 68%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0