SRR10385641

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Ophraella communa bulk RNA-seq from HiSeq 4000 with ~20.4M short reads at exceptional quality (Q30: 97%, Q20: 99%), well-powered for functional genomics and host-plant interaction studies. The 39.4% GC and pristine metrics enable sensitive expression profiling.

Data type / assay

bulk-RNA-seq

Organism

Ophraella communa

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6108477000 reported

total reads 20361590 reported

n content pct 0.001 measured

pct q20 bases 99 measured

pct q30 bases 97 measured

gc content pct 39.4 measured

mean read length 150 measured

mean base quality 39.7 measured

adapter content pct 0 measured

duplication rate pct 37.78 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97 measured ×1 100%

mean base quality 39.7 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 37.78 measured ×0.4 83%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0