SRR10391995

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apis mellifera bulk RNA-seq from BGISEQ-500 with ~56.9M reads and good quality (Q30: 89.2%), suitable for honey bee functional genomics. The elevated read count and biological relevance justify moderate per-base quality for abundance profiling.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8536713300 reported

total reads 56911422 reported

n content pct 0.063 measured

pct q20 bases 97.1 measured

pct q30 bases 89.2 measured

gc content pct 36.1 measured

mean read length 150 measured

mean base quality 34.8 measured

adapter content pct 0 measured

duplication rate pct 23.51 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.2 measured ×1 96%

mean base quality 34.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 23.51 measured ×0.4 100%

QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0