SRR10392001

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apis mellifera bulk RNA-seq from BGISEQ-500 generating >57.7M reads with good quality (Q30: 88.2%), suitable for comprehensive honey bee transcriptomics. The elevated read count compensates for moderate per-base quality for gene-level quantification.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8666196300 reported

total reads 57774642 reported

n content pct 0 measured

pct q20 bases 96.7 measured

pct q30 bases 88.2 measured

gc content pct 37 measured

mean read length 150 measured

mean base quality 34.6 measured

adapter content pct 0 measured

duplication rate pct 36.61 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.2 measured ×1 91%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 36.61 measured ×0.4 85%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0