SRR10393096

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apis mellifera RNA-seq via BGISEQ-500 platform generating 9.5 billion bases (96.8% Q20), providing substantial transcriptome depth for the honeybee; platform differences relative to Illumina may introduce subtle composition biases requiring specialized analysis considerations.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9498181500 reported

total reads 63321210 reported

n content pct 0.06 measured

pct q20 bases 96.8 measured

pct q30 bases 88.8 measured

gc content pct 40.9 measured

mean read length 150 measured

mean base quality 34.7 measured

adapter content pct 0 measured

duplication rate pct 22.59 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.8 measured ×1 94%

mean base quality 34.7 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 22.59 measured ×0.4 100%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0