SRR1039744

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Illumina short-read bulk RNA-seq; grade A, highly recommended for reuse. Outstanding base quality (Q30=95.5%, mean BQ=37.2) with low duplication (31.74%) provides exceptional sensitivity and specificity for transcript quantification and differential expression analysis.

Data type / assay

bulk-RNA-seq

Organism

Drosophila melanogaster

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 795214120 reported

total reads 19880353 reported

n content pct 0.008 measured

pct q20 bases 98.7 measured

pct q30 bases 95.5 measured

gc content pct 51 measured

mean read length 40 measured

mean base quality 37.2 measured

adapter content pct 0 measured

duplication rate pct 31.74 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

mean base quality 37.2 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 31.74 measured ×0.4 96%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0