SRR10398018

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Zerene cesonia RNA-seq from NextSeq 500 with ~44.9M reads and moderate quality (Q30: 86%), providing ample coverage for expression profiling despite some quality trade-off. The 53.8% GC is consistent with this species.

Data type / assay

bulk-RNA-seq

Organism

Zerene cesonia

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 13550339850 reported

total reads 44868675 reported

n content pct 0.001 measured

pct q20 bases 93.2 measured

pct q30 bases 86 measured

gc content pct 53.8 measured

mean read length 151 measured

mean base quality 33.1 measured

adapter content pct 4.1 measured

duplication rate pct 56.68 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86 measured ×1 80%

mean base quality 33.1 measured ×0.6 85%

adapter content pct 4.1 measured ×0.4 88%

duplication rate pct 56.68 measured ×0.4 41%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0