SRR10398020

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Zerene cesonia bulk RNA-seq from NextSeq 500 with ~49M reads and moderate quality (Q30: 87.7%), offering high coverage for expression studies. The 54% GC is characteristic of this butterfly and consistent with other Zerene libraries.

Data type / assay

bulk-RNA-seq

Organism

Zerene cesonia

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 14811970520 reported

total reads 49046260 reported

n content pct 0.001 measured

pct q20 bases 94.6 measured

pct q30 bases 87.7 measured

gc content pct 54 measured

mean read length 151 measured

mean base quality 33.4 measured

adapter content pct 4.6 measured

duplication rate pct 67.74 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.7 measured ×1 89%

mean base quality 33.4 measured ×0.6 90%

adapter content pct 4.6 measured ×0.4 86%

duplication rate pct 67.74 measured ×0.4 16%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0