SRR10411333

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apolygus lucorum RNA-seq on HiSeq 2500 totaling 9.3 billion bases with outstanding metrics (98.3% Q20, 0.001% N-content), providing ultra-deep transcriptome coverage for this agricultural pest; exceptional depth enables sensitive isoform discovery and expression profiling.

Data type / assay

bulk-RNA-seq

Organism

Apolygus lucorum

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9286197970 reported

total reads 31061473 reported

n content pct 0.001 measured

pct q20 bases 98.3 measured

pct q30 bases 95.4 measured

gc content pct 46.4 measured

mean read length 149.5 measured

mean base quality 39.3 measured

adapter content pct 0 measured

duplication rate pct 30.68 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.4 measured ×1 100%

mean base quality 39.3 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 30.68 measured ×0.4 99%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0