SRR10411570

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Apolygus lucorum RNA-seq on HiSeq 4000 generating 10.5 billion bases at excellent quality (97.2% Q20, 0% N-content), supporting robust expression profiling for this agricultural pest; consistent performance across paired HiSeq 4000 samples enables statistical comparisons.

Data type / assay

bulk-RNA-seq

Organism

Apolygus lucorum

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10521936600 reported

total reads 35073122 reported

n content pct 0 measured

pct q20 bases 97.2 measured

pct q30 bases 92.9 measured

gc content pct 44.9 measured

mean read length 150 measured

mean base quality 37.5 measured

adapter content pct 1.13 measured

duplication rate pct 37.48 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.9 measured ×1 100%

mean base quality 37.5 measured ×0.6 100%

adapter content pct 1.13 measured ×0.4 100%

duplication rate pct 37.48 measured ×0.4 83%

QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0