SRR10437528

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Medauroidea extradentata bulk RNA-seq from HiSeq 4000 generating >22.6M reads with excellent quality (Q30: 96.9%, Q20: 98.9%), ideal for stick insect transcriptomics and functional studies. The 34.7% GC is on the low end; confirm species-specific compositional patterns.

Data type / assay

bulk-RNA-seq

Organism

Medauroidea extradentata

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4572999826 reported

total reads 22638613 reported

n content pct 0.023 measured

pct q20 bases 98.9 measured

pct q30 bases 96.9 measured

gc content pct 34.7 measured

mean read length 101 measured

mean base quality 39.6 measured

adapter content pct 0.82 measured

duplication rate pct 54.6 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

mean base quality 39.6 measured ×0.6 100%

adapter content pct 0.82 measured ×0.4 100%

duplication rate pct 54.6 measured ×0.4 45%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0