SRR10441637

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS (Canis lupus familiaris, 290M reads) with grade B (85/100), constrained by duplication_rate_pct=26.71 (measured, scoring 42/100) from standard genomic DNA library prep; Q30=94.3% and mean base quality=39 both score 100/100 (measured). Duplication is acceptable for variant calling; large depth and long reads (151bp) support genome-wide applications.

Data type / assay

WGS

Organism

Canis lupus familiaris

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 87592758292 reported

total reads 290042246 reported

n content pct 0.006 measured

pct q20 bases 97.5 measured

pct q30 bases 94.3 measured

gc content pct 44.1 measured

mean read length 151 measured

mean base quality 39 measured

adapter content pct 0.73 measured

duplication rate pct 26.71 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.3 measured ×1 100%

duplication rate pct 26.71 measured ×0.5 42%

adapter content pct 0.73 measured ×0.4 100%

QC cost 31 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0